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Please note that this page does not hosts or makes available any of the listed filenames. You
cannot download any of those files from here.
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| _GSEA.rnk |
210B |
| _pred.gtf |
297B |
| _ref.gtf |
353B |
| 001 Biology for differential gene expression analysis - introduction_en.vtt |
1013B |
| 001 Biology for differential gene expression analysis - introduction.mp4 |
11.69MB |
| 001 Capstone project_en.vtt |
1.09KB |
| 001 Capstone project.mp4 |
4.68MB |
| 001 First things first - RStudio installation_en.vtt |
3.55KB |
| 001 First things first - RStudio installation.mp4 |
19.29MB |
| 001 Intro to RNAseq_en.vtt |
8.77KB |
| 001 Intro to RNAseq.mp4 |
44.34MB |
| 001 Lab techniques for differential gene expression analysis - intro_en.vtt |
554B |
| 001 Lab techniques for differential gene expression analysis - intro.mp4 |
6.26MB |
| 001 Pathway analysis - ORA + GSEA approaches_en.vtt |
18.40KB |
| 001 Pathway analysis - ORA + GSEA approaches.mp4 |
232.57MB |
| 001 Visualization of gene expression data_en.vtt |
19.28KB |
| 001 Visualization of gene expression data.mp4 |
182.79MB |
| 001 Welcome to the course__en.vtt |
3.30KB |
| 001 Welcome to the course_.mp4 |
71.11MB |
| 002 Analytical advantages of RNAseq and overview of RNAseq analysis pipeline_en.vtt |
10.70KB |
| 002 Analytical advantages of RNAseq and overview of RNAseq analysis pipeline.mp4 |
41.79MB |
| 002 Capstone project materials.html |
3.06KB |
| 002 Course structure, aims and objectives_en.vtt |
3.29KB |
| 002 Course structure, aims and objectives.mp4 |
40.87MB |
| 002 Differential gene expression - fundamentals_en.vtt |
5.87KB |
| 002 Differential gene expression - fundamentals.mp4 |
57.21MB |
| 002 Hands on ORA-based pathway analysis.html |
1.24KB |
| 002 Sequencing_en.vtt |
1.08KB |
| 002 Sequencing.mp4 |
11.37MB |
| 002 Using Venny for venn diagram analysis.html |
1.13KB |
| 002 What is this thing called bioinformatics__en.vtt |
11.13KB |
| 002 What is this thing called bioinformatics_.mp4 |
31.62MB |
| 003 Hands on GSEA-based pathway analysis.html |
581B |
| 003 Learn to visualize gene expression data in R.html |
6.72KB |
| 003 Overview of gene expression_en.vtt |
9.22KB |
| 003 Overview of gene expression.mp4 |
116.46MB |
| 003 PCR_en.vtt |
2.37KB |
| 003 PCR.mp4 |
27.71MB |
| 003 RNAseq analysis pipeline_en.vtt |
6.60KB |
| 003 RNAseq analysis pipeline.mp4 |
20.51MB |
| 003 Sample preparation for differential gene expression analysis_en.vtt |
6.20KB |
| 003 Sample preparation for differential gene expression analysis.mp4 |
25.85MB |
| 003 Your first bioinformatic challenge__en.vtt |
855B |
| 003 Your first bioinformatic challenge_.mp4 |
4.02MB |
| 004 FastQC_ assessing the quality of sequencing library_en.vtt |
9.40KB |
| 004 FastQC_ assessing the quality of sequencing library.mp4 |
36.86MB |
| 004 Measuring gene expression with qPCR_en.vtt |
6.42KB |
| 004 Measuring gene expression with qPCR.mp4 |
94.30MB |
| 004 Quiz 1 file - an explanation_en.vtt |
960B |
| 004 Quiz 1 file - an explanation.mp4 |
20.71MB |
| 004 Sanger sequencing_en.vtt |
3.78KB |
| 004 Sanger sequencing.mp4 |
11.26MB |
| 004 Translation of genetic code - theory_en.vtt |
5.92KB |
| 004 Translation of genetic code - theory.mp4 |
15.58MB |
| 004 Using pathway analysis in hypothesis-free studies_en.vtt |
3.98KB |
| 004 Using pathway analysis in hypothesis-free studies.mp4 |
17.86MB |
| 004 Visualization of gene expression data hands on exercise.html |
1.02KB |
| 005 Next generation sequencing_en.vtt |
4.40KB |
| 005 Next generation sequencing.mp4 |
12.51MB |
| 005 qPCR quantification of gene expression_en.vtt |
15.94KB |
| 005 qPCR quantification of gene expression.mp4 |
145.38MB |
| 005 Quiz 1 walkthrough - undertaking a BLAST search_en.vtt |
6.33KB |
| 005 Quiz 1 walkthrough - undertaking a BLAST search.mp4 |
49.94MB |
| 005 Translation of genetic code - practice_en.vtt |
5.70KB |
| 005 Translation of genetic code - practice.mp4 |
17.63MB |
| 005 Your FastQC exercise.html |
928B |
| 006 FastQC exercise walkthrough_en.vtt |
1.92KB |
| 006 FastQC exercise walkthrough.mp4 |
8.68MB |
| 006 Microarrays_en.vtt |
3.21KB |
| 006 Microarrays.mp4 |
39.78MB |
| 006 Open Reading Frame translation walk-through_en.vtt |
2.64KB |
| 006 Open Reading Frame translation walk-through.mp4 |
6.96MB |
| 006 qPCR quiz - part 1 - intro_en.vtt |
1.23KB |
| 006 qPCR quiz - part 1 - intro.mp4 |
4.87MB |
| 007 Alignment (TUXEDO)_en.vtt |
9.94KB |
| 007 Alignment (TUXEDO).mp4 |
29.82MB |
| 007 Gene structure and splicing_en.vtt |
5.96KB |
| 007 Gene structure and splicing.mp4 |
19.18MB |
| 007 Lab techniques for differential gene expression analysis - section summary_en.vtt |
473B |
| 007 Lab techniques for differential gene expression analysis - section summary.mp4 |
4.57MB |
| 007 qPCR quiz walkthrough - part 1_en.vtt |
6.26KB |
| 007 qPCR quiz walkthrough - part 1.mp4 |
14.29MB |
| 008 Alignment (Rsubread)_en.vtt |
15.37KB |
| 008 Alignment (Rsubread).mp4 |
116.30MB |
| 008 Biology for differential gene expression analysis - section summary_en.vtt |
741B |
| 008 Biology for differential gene expression analysis - section summary.mp4 |
4.21MB |
| 008 Experimental considerations for differential gene expression_en.vtt |
8.82KB |
| 008 Experimental considerations for differential gene expression.mp4 |
205.89MB |
| 009 Rsubread alignment_ stringent vs. less stringent alignment criteria.html |
1.23KB |
| 009 Statistical considerations for differential gene expression_en.vtt |
9.15KB |
| 009 Statistical considerations for differential gene expression.mp4 |
108.85MB |
| 010 Spreadsheet qPCR analysis_ preserving variability of expression_en.vtt |
5.85KB |
| 010 Spreadsheet qPCR analysis_ preserving variability of expression.mp4 |
13.46MB |
| 010 Strict and less strict alignment walkthrough_en.vtt |
5.49KB |
| 010 Strict and less strict alignment walkthrough.mp4 |
21.65MB |
| 011 Data analysis in RStudio_en.vtt |
16.99KB |
| 011 Data analysis in RStudio.mp4 |
54.18MB |
| 011 Strict and less strict alignment quiz walkthrough_en.vtt |
8.91KB |
| 011 Strict and less strict alignment quiz walkthrough.mp4 |
26.78MB |
| 012 Getting ready for your next quiz_ dat package deprecation and functions.html |
4.95KB |
| 012 Transcriptome assembly (TUXEDO)_en.vtt |
11.85KB |
| 012 Transcriptome assembly (TUXEDO).mp4 |
48.48MB |
| 013 Installing Cuff-apps from TUXEDO toolkit_en.vtt |
5.27KB |
| 013 Installing Cuff-apps from TUXEDO toolkit.mp4 |
38.62MB |
| 013 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q1.html |
1.38KB |
| 014 Comparing genome annotations with Cuffcompare.html |
691B |
| 014 Part 2 - Q1 Walkthrough_en.vtt |
14.21KB |
| 014 Part 2 - Q1 Walkthrough.mp4 |
65.65MB |
| 015 Cuffcompare quiz walkthrough_en.vtt |
19.46KB |
| 015 Cuffcompare quiz walkthrough.mp4 |
93.68MB |
| 015 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q2.html |
635B |
| 016 Part 2 - Q2 walkthrough_en.vtt |
2.75KB |
| 016 Part 2 - Q2 walkthrough.mp4 |
11.58MB |
| 016 Read counts and FPKM_RPKM_en.vtt |
5.26KB |
| 016 Read counts and FPKM_RPKM.mp4 |
20.20MB |
| 017 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q3.html |
1.21KB |
| 017 Read counting (TUXEDO)_en.vtt |
4.29KB |
| 017 Read counting (TUXEDO).mp4 |
22.50MB |
| 018 Part 2 - Q3 walkthrough_en.vtt |
9.58KB |
| 018 Part 2 - Q3 walkthrough.mp4 |
32.41MB |
| 018 Read counts (Rsubread).html |
112B |
| 019 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q4.html |
571B |
| 019 RPKM normalization (R)_en.vtt |
3.95KB |
| 019 RPKM normalization (R).mp4 |
15.75MB |
| 020 Convert read counts to RPKMs.html |
275B |
| 020 Part 2 - Q4 walkthrough_en.vtt |
7.29KB |
| 020 Part 2 - Q4 walkthrough.mp4 |
22.89MB |
| 021 Quiz 18 - Code to get the answers walkthrough.html |
2.18KB |
| 022 Differential gene expression (TUXEDO)_en.vtt |
2.59KB |
| 022 Differential gene expression (TUXEDO).mp4 |
10.33MB |
| 023 General Linear Models (GLMs) for differential gene expression analysis - part 1_en.vtt |
14.31KB |
| 023 General Linear Models (GLMs) for differential gene expression analysis - part 1.mp4 |
182.88MB |
| 024 GLMs for differential gene expression analysis - part 2_en.vtt |
8.76KB |
| 024 GLMs for differential gene expression analysis - part 2.mp4 |
33.88MB |
| 025 GLMs for differential gene expression analysis - part 3_en.vtt |
3.94KB |
| 025 GLMs for differential gene expression analysis - part 3.mp4 |
10.83MB |
| 026 GLMs for differential gene expression analysis - part 4_en.vtt |
4.76KB |
| 026 GLMs for differential gene expression analysis - part 4.mp4 |
13.57MB |
| 027 Design matrices for GLMs_en.vtt |
4.10KB |
| 027 Design matrices for GLMs.mp4 |
11.39MB |
| 028 Further read count processing for differential expression analysis_en.vtt |
3.81KB |
| 028 Further read count processing for differential expression analysis.mp4 |
15.21MB |
| 029 Differential expression (R's GLM)_ limma, edgeR_en.vtt |
7.63KB |
| 029 Differential expression (R's GLM)_ limma, edgeR.mp4 |
24.49MB |
| 030 Differential expression_ impact of filtering & normalization.html |
846B |
| 031 Differential expression quiz walkthrough_en.vtt |
5.88KB |
| 031 Differential expression quiz walkthrough.mp4 |
21.05MB |
| 032 Differential expression_ RankProd_en.vtt |
16.02KB |
| 032 Differential expression_ RankProd.mp4 |
187.60MB |
| 033 Differential expression with RankProd in R.html |
4.31KB |
| 034 RankProd Quiz walkthrough_en.vtt |
8.60KB |
| 034 RankProd Quiz walkthrough.mp4 |
32.50MB |
| 22397215-seq.fasta.txt |
18.74KB |
| 23053306-I.csv |
785B |
| 23122006-II.csv |
785B |
| 23122890-III.csv |
1.14KB |
| 23129856-IV.csv |
1.52KB |
| 23132060-I.R.txt |
1.10KB |
| 23132068-II.R.txt |
1.10KB |
| 23132080-III.R.txt |
2.00KB |
| 23132090-IV.R.txt |
2.42KB |
| 23327894-sequencing-sample.fastq.txt |
134.18MB |
| 23404398-alignment.R.txt |
921B |
| 23412554-hg19-chr1.fa.txt |
241.10MB |
| 23414530-1.fastq.txt |
184.26MB |
| 23715426-gene-lengths.csv |
473.03KB |
| 23715442-raw-counts.csv |
424.05KB |
| 24461546-gene-lengths.csv |
473.03KB |
| 24461550-raw-counts.csv |
424.05KB |
| 26430078-ORA.txt |
231B |
| 26459340-Venny-exercise.csv |
77.58KB |
| 26792492-d.csv |
2.59MB |
| 26809904-capstone.csv |
7.24MB |
| 28879892-RankProd-analysis-class.csv |
2.08MB |
| 30949486-data.Rdata |
22.51KB |
| Bonus Resources.txt |
357B |
| external-assets-links.txt |
140B |
| Get Bonus Downloads Here.url |
178B |
| GSEA.rnk |
285.43KB |
| pred.gtf |
463.91MB |
| ref.gtf |
465.11MB |