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| _GSEA.rnk |
210б |
| _pred.gtf |
297б |
| _ref.gtf |
353б |
| 001 Biology for differential gene expression analysis - introduction_en.vtt |
1013б |
| 001 Biology for differential gene expression analysis - introduction.mp4 |
11.69Мб |
| 001 Capstone project_en.vtt |
1.09Кб |
| 001 Capstone project.mp4 |
4.68Мб |
| 001 First things first - RStudio installation_en.vtt |
3.55Кб |
| 001 First things first - RStudio installation.mp4 |
19.29Мб |
| 001 Intro to RNAseq_en.vtt |
8.77Кб |
| 001 Intro to RNAseq.mp4 |
44.34Мб |
| 001 Lab techniques for differential gene expression analysis - intro_en.vtt |
554б |
| 001 Lab techniques for differential gene expression analysis - intro.mp4 |
6.26Мб |
| 001 Pathway analysis - ORA + GSEA approaches_en.vtt |
18.40Кб |
| 001 Pathway analysis - ORA + GSEA approaches.mp4 |
232.57Мб |
| 001 Visualization of gene expression data_en.vtt |
19.28Кб |
| 001 Visualization of gene expression data.mp4 |
182.79Мб |
| 001 Welcome to the course__en.vtt |
3.30Кб |
| 001 Welcome to the course_.mp4 |
71.11Мб |
| 002 Analytical advantages of RNAseq and overview of RNAseq analysis pipeline_en.vtt |
10.70Кб |
| 002 Analytical advantages of RNAseq and overview of RNAseq analysis pipeline.mp4 |
41.79Мб |
| 002 Capstone project materials.html |
3.06Кб |
| 002 Course structure, aims and objectives_en.vtt |
3.29Кб |
| 002 Course structure, aims and objectives.mp4 |
40.87Мб |
| 002 Differential gene expression - fundamentals_en.vtt |
5.87Кб |
| 002 Differential gene expression - fundamentals.mp4 |
57.21Мб |
| 002 Hands on ORA-based pathway analysis.html |
1.24Кб |
| 002 Sequencing_en.vtt |
1.08Кб |
| 002 Sequencing.mp4 |
11.37Мб |
| 002 Using Venny for venn diagram analysis.html |
1.13Кб |
| 002 What is this thing called bioinformatics__en.vtt |
11.13Кб |
| 002 What is this thing called bioinformatics_.mp4 |
31.62Мб |
| 003 Hands on GSEA-based pathway analysis.html |
581б |
| 003 Learn to visualize gene expression data in R.html |
6.72Кб |
| 003 Overview of gene expression_en.vtt |
9.22Кб |
| 003 Overview of gene expression.mp4 |
116.46Мб |
| 003 PCR_en.vtt |
2.37Кб |
| 003 PCR.mp4 |
27.71Мб |
| 003 RNAseq analysis pipeline_en.vtt |
6.60Кб |
| 003 RNAseq analysis pipeline.mp4 |
20.51Мб |
| 003 Sample preparation for differential gene expression analysis_en.vtt |
6.20Кб |
| 003 Sample preparation for differential gene expression analysis.mp4 |
25.85Мб |
| 003 Your first bioinformatic challenge__en.vtt |
855б |
| 003 Your first bioinformatic challenge_.mp4 |
4.02Мб |
| 004 FastQC_ assessing the quality of sequencing library_en.vtt |
9.40Кб |
| 004 FastQC_ assessing the quality of sequencing library.mp4 |
36.86Мб |
| 004 Measuring gene expression with qPCR_en.vtt |
6.42Кб |
| 004 Measuring gene expression with qPCR.mp4 |
94.30Мб |
| 004 Quiz 1 file - an explanation_en.vtt |
960б |
| 004 Quiz 1 file - an explanation.mp4 |
20.71Мб |
| 004 Sanger sequencing_en.vtt |
3.78Кб |
| 004 Sanger sequencing.mp4 |
11.26Мб |
| 004 Translation of genetic code - theory_en.vtt |
5.92Кб |
| 004 Translation of genetic code - theory.mp4 |
15.58Мб |
| 004 Using pathway analysis in hypothesis-free studies_en.vtt |
3.98Кб |
| 004 Using pathway analysis in hypothesis-free studies.mp4 |
17.86Мб |
| 004 Visualization of gene expression data hands on exercise.html |
1.02Кб |
| 005 Next generation sequencing_en.vtt |
4.40Кб |
| 005 Next generation sequencing.mp4 |
12.51Мб |
| 005 qPCR quantification of gene expression_en.vtt |
15.94Кб |
| 005 qPCR quantification of gene expression.mp4 |
145.38Мб |
| 005 Quiz 1 walkthrough - undertaking a BLAST search_en.vtt |
6.33Кб |
| 005 Quiz 1 walkthrough - undertaking a BLAST search.mp4 |
49.94Мб |
| 005 Translation of genetic code - practice_en.vtt |
5.70Кб |
| 005 Translation of genetic code - practice.mp4 |
17.63Мб |
| 005 Your FastQC exercise.html |
928б |
| 006 FastQC exercise walkthrough_en.vtt |
1.92Кб |
| 006 FastQC exercise walkthrough.mp4 |
8.68Мб |
| 006 Microarrays_en.vtt |
3.21Кб |
| 006 Microarrays.mp4 |
39.78Мб |
| 006 Open Reading Frame translation walk-through_en.vtt |
2.64Кб |
| 006 Open Reading Frame translation walk-through.mp4 |
6.96Мб |
| 006 qPCR quiz - part 1 - intro_en.vtt |
1.23Кб |
| 006 qPCR quiz - part 1 - intro.mp4 |
4.87Мб |
| 007 Alignment (TUXEDO)_en.vtt |
9.94Кб |
| 007 Alignment (TUXEDO).mp4 |
29.82Мб |
| 007 Gene structure and splicing_en.vtt |
5.96Кб |
| 007 Gene structure and splicing.mp4 |
19.18Мб |
| 007 Lab techniques for differential gene expression analysis - section summary_en.vtt |
473б |
| 007 Lab techniques for differential gene expression analysis - section summary.mp4 |
4.57Мб |
| 007 qPCR quiz walkthrough - part 1_en.vtt |
6.26Кб |
| 007 qPCR quiz walkthrough - part 1.mp4 |
14.29Мб |
| 008 Alignment (Rsubread)_en.vtt |
15.37Кб |
| 008 Alignment (Rsubread).mp4 |
116.30Мб |
| 008 Biology for differential gene expression analysis - section summary_en.vtt |
741б |
| 008 Biology for differential gene expression analysis - section summary.mp4 |
4.21Мб |
| 008 Experimental considerations for differential gene expression_en.vtt |
8.82Кб |
| 008 Experimental considerations for differential gene expression.mp4 |
205.89Мб |
| 009 Rsubread alignment_ stringent vs. less stringent alignment criteria.html |
1.23Кб |
| 009 Statistical considerations for differential gene expression_en.vtt |
9.15Кб |
| 009 Statistical considerations for differential gene expression.mp4 |
108.85Мб |
| 010 Spreadsheet qPCR analysis_ preserving variability of expression_en.vtt |
5.85Кб |
| 010 Spreadsheet qPCR analysis_ preserving variability of expression.mp4 |
13.46Мб |
| 010 Strict and less strict alignment walkthrough_en.vtt |
5.49Кб |
| 010 Strict and less strict alignment walkthrough.mp4 |
21.65Мб |
| 011 Data analysis in RStudio_en.vtt |
16.99Кб |
| 011 Data analysis in RStudio.mp4 |
54.18Мб |
| 011 Strict and less strict alignment quiz walkthrough_en.vtt |
8.91Кб |
| 011 Strict and less strict alignment quiz walkthrough.mp4 |
26.78Мб |
| 012 Getting ready for your next quiz_ dat package deprecation and functions.html |
4.95Кб |
| 012 Transcriptome assembly (TUXEDO)_en.vtt |
11.85Кб |
| 012 Transcriptome assembly (TUXEDO).mp4 |
48.48Мб |
| 013 Installing Cuff-apps from TUXEDO toolkit_en.vtt |
5.27Кб |
| 013 Installing Cuff-apps from TUXEDO toolkit.mp4 |
38.62Мб |
| 013 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q1.html |
1.38Кб |
| 014 Comparing genome annotations with Cuffcompare.html |
691б |
| 014 Part 2 - Q1 Walkthrough_en.vtt |
14.21Кб |
| 014 Part 2 - Q1 Walkthrough.mp4 |
65.65Мб |
| 015 Cuffcompare quiz walkthrough_en.vtt |
19.46Кб |
| 015 Cuffcompare quiz walkthrough.mp4 |
93.68Мб |
| 015 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q2.html |
635б |
| 016 Part 2 - Q2 walkthrough_en.vtt |
2.75Кб |
| 016 Part 2 - Q2 walkthrough.mp4 |
11.58Мб |
| 016 Read counts and FPKM_RPKM_en.vtt |
5.26Кб |
| 016 Read counts and FPKM_RPKM.mp4 |
20.20Мб |
| 017 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q3.html |
1.21Кб |
| 017 Read counting (TUXEDO)_en.vtt |
4.29Кб |
| 017 Read counting (TUXEDO).mp4 |
22.50Мб |
| 018 Part 2 - Q3 walkthrough_en.vtt |
9.58Кб |
| 018 Part 2 - Q3 walkthrough.mp4 |
32.41Мб |
| 018 Read counts (Rsubread).html |
112б |
| 019 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q4.html |
571б |
| 019 RPKM normalization (R)_en.vtt |
3.95Кб |
| 019 RPKM normalization (R).mp4 |
15.75Мб |
| 020 Convert read counts to RPKMs.html |
275б |
| 020 Part 2 - Q4 walkthrough_en.vtt |
7.29Кб |
| 020 Part 2 - Q4 walkthrough.mp4 |
22.89Мб |
| 021 Quiz 18 - Code to get the answers walkthrough.html |
2.18Кб |
| 022 Differential gene expression (TUXEDO)_en.vtt |
2.59Кб |
| 022 Differential gene expression (TUXEDO).mp4 |
10.33Мб |
| 023 General Linear Models (GLMs) for differential gene expression analysis - part 1_en.vtt |
14.31Кб |
| 023 General Linear Models (GLMs) for differential gene expression analysis - part 1.mp4 |
182.88Мб |
| 024 GLMs for differential gene expression analysis - part 2_en.vtt |
8.76Кб |
| 024 GLMs for differential gene expression analysis - part 2.mp4 |
33.88Мб |
| 025 GLMs for differential gene expression analysis - part 3_en.vtt |
3.94Кб |
| 025 GLMs for differential gene expression analysis - part 3.mp4 |
10.83Мб |
| 026 GLMs for differential gene expression analysis - part 4_en.vtt |
4.76Кб |
| 026 GLMs for differential gene expression analysis - part 4.mp4 |
13.57Мб |
| 027 Design matrices for GLMs_en.vtt |
4.10Кб |
| 027 Design matrices for GLMs.mp4 |
11.39Мб |
| 028 Further read count processing for differential expression analysis_en.vtt |
3.81Кб |
| 028 Further read count processing for differential expression analysis.mp4 |
15.21Мб |
| 029 Differential expression (R's GLM)_ limma, edgeR_en.vtt |
7.63Кб |
| 029 Differential expression (R's GLM)_ limma, edgeR.mp4 |
24.49Мб |
| 030 Differential expression_ impact of filtering & normalization.html |
846б |
| 031 Differential expression quiz walkthrough_en.vtt |
5.88Кб |
| 031 Differential expression quiz walkthrough.mp4 |
21.05Мб |
| 032 Differential expression_ RankProd_en.vtt |
16.02Кб |
| 032 Differential expression_ RankProd.mp4 |
187.60Мб |
| 033 Differential expression with RankProd in R.html |
4.31Кб |
| 034 RankProd Quiz walkthrough_en.vtt |
8.60Кб |
| 034 RankProd Quiz walkthrough.mp4 |
32.50Мб |
| 22397215-seq.fasta.txt |
18.74Кб |
| 23053306-I.csv |
785б |
| 23122006-II.csv |
785б |
| 23122890-III.csv |
1.14Кб |
| 23129856-IV.csv |
1.52Кб |
| 23132060-I.R.txt |
1.10Кб |
| 23132068-II.R.txt |
1.10Кб |
| 23132080-III.R.txt |
2.00Кб |
| 23132090-IV.R.txt |
2.42Кб |
| 23327894-sequencing-sample.fastq.txt |
134.18Мб |
| 23404398-alignment.R.txt |
921б |
| 23412554-hg19-chr1.fa.txt |
241.10Мб |
| 23414530-1.fastq.txt |
184.26Мб |
| 23715426-gene-lengths.csv |
473.03Кб |
| 23715442-raw-counts.csv |
424.05Кб |
| 24461546-gene-lengths.csv |
473.03Кб |
| 24461550-raw-counts.csv |
424.05Кб |
| 26430078-ORA.txt |
231б |
| 26459340-Venny-exercise.csv |
77.58Кб |
| 26792492-d.csv |
2.59Мб |
| 26809904-capstone.csv |
7.24Мб |
| 28879892-RankProd-analysis-class.csv |
2.08Мб |
| 30949486-data.Rdata |
22.51Кб |
| Bonus Resources.txt |
357б |
| external-assets-links.txt |
140б |
| Get Bonus Downloads Here.url |
178б |
| GSEA.rnk |
285.43Кб |
| pred.gtf |
463.91Мб |
| ref.gtf |
465.11Мб |